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Abstract The Southern Ocean is rich in highly dynamic mesoscale eddies and substantially modulates global biogeochemical cycles. However, the overall surface and subsurface effects of eddies on the Southern Ocean biogeochemistry have not been quantified observationally at a large scale. Here, we co‐locate eddies, identified in the Meta3.2DT satellite altimeter‐based product, with biogeochemical Argo floats to determine the effects of eddies on the dissolved inorganic carbon (DIC), nitrate, and dissolved oxygen concentrations in the upper 1,500 m of the ice‐free Southern Ocean, as well as the eddy effects on the carbon fluxes in this region. DIC and nitrate concentrations are lower in anticyclonic eddies (AEs) and increased in cyclonic eddies (CEs), while dissolved oxygen anomalies switch signs above (CEs: positive, AEs: negative) and below the mixed layer (CEs: negative, AEs: positive). We attribute these anomalies primarily to eddy pumping (isopycnal heave), as well as eddy trapping for oxygen. Maximum anomalies in all tracers occur at greater depths in the subduction zone north of the Antarctic Circumpolar Current (ACC) compared to the upwelling region in the ACC, reflecting differences in background vertical structures. Eddy effects on air–sea exchange have significant seasonal variability, with additional outgassing in CEs in fall (physical process) and additional oceanic uptake in AEs and CEs in spring (biological and physical process). Integrated over the Southern Ocean, AEs contribute 0.01 Pg C (7 ) to the Southern Ocean carbon uptake, and CEs offset this by 0.01 Pg C (2 ). These findings underscore the importance of considering eddy impacts in observing networks and climate models. 

Abstract Anthropogenic carbon emissions and associated climate change are driving rapid warming, acidification, and deoxygenation in the ocean, which increasingly stress marine ecosystems. On top of long‐term trends, short term variability of marine stressors can have major implications for marine ecosystems and their management. As such, there is a growing need for predictions of marine ecosystem stressors on monthly, seasonal, and multi‐month timescales. Previous studies have demonstrated the ability to make reliable predictions of the surface ocean physical and biogeochemical state months to years in advance, but few studies have investigated forecast skill of multiple stressors simultaneously or assessed the forecast skill below the surface. Here, we use the Community Earth System Model (CESM) Seasonal to Multiyear Large Ensemble (SMYLE) along with novel observation‐based biogeochemical and physical products to quantify the predictive skill of dissolved inorganic carbon (DIC), dissolved oxygen, and temperature in the surface and subsurface ocean. CESM SMYLE demonstrates high physical and biogeochemical predictive skill multiple months in advance in key oceanic regions and frequently outperforms persistence forecasts. We find up to 10 months of skillful forecasts, with particularly high skill in the Northeast Pacific (Gulf of Alaska and California Current Large Marine Ecosystems) for temperature, surface DIC, and subsurface oxygen. Our findings suggest that dynamical marine ecosystem prediction could support actionable advice for decision making.